PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_FA8CAF2B5.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 701aa    MW: 80239.9 Da    PI: 7.3427
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_FA8CAF2B5.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.59.8e-131593799
                           EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           +l+ ++g++W v+l  +k ++ ++lt+GW +Fv +n L+e +f++F++d++++f  +v+vf +
  Traes_3DL_FA8CAF2B5.3  1 MLKRSEGKTWVVEL--EKVDRCVFLTTGWPKFVVDNSLREYEFLLFRHDKKMDF--MVSVFGR 59
                           578899********..999999*************************9999999..9999976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.521160IPR003340B3 DNA binding domain
PfamPF023627.3E-10259IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-15266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-13262IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-10257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MLKRSEGKTW VVELEKVDRC VFLTTGWPKF VVDNSLREYE FLLFRHDKKM DFMVSVFGRN  60
ACEKAVRSSG SAAQATESLE RKLPCDMLPT RKRGHSGDEL TKTINNLRQS HSLVMIPDQS  120
DTKIFPFQRS TKGNGHISPQ SFADIHLHEV DGLKDELKIY LLLKVPMDDD KAKVIAEVMS  180
RLHVDRVTVD LFCATLCLYK WDSDAAAEVL NTCRGKPQIP NQFLKQKLVL QFDFIKRELR  240
HFFPTGDDCP PQIRDSRESS LEEPNLSTQA LQNYLPAVKS KLVDDHELCD LSYKQKRRIV  300
KSRSQQISET PRRSPRLAHL KNSGGSIDSG LKEKPEVLES SPSSTIDQVE HRAGHACLLY  360
EKPEHVFEGD RQHAIGSLSQ DFKRLKRTRG KVGLSEKPQH NQENEEKIDQ GNNGEIFEEQ  420
VDRNAAETSE SFMGRDWIDP SPPTKSKLSS MIINELCLTW KPSVHTNSLE NVLLHIQCDN  480
FMKTITHVQG IIRSSPSDLH CAAIIEAVVQ KEILKWDSCL QDVDAQRVVI ALLEHAKKIK  540
EIHNFNMESR KEEFSTKLQD QLKWQLKELE SVCTSLEFDY KKVTCDGNIA VSTSQEQKKK  600
LHALQDEIKG LQQSMMMENE IQKLVHQVAE HESLVQKSLM ERVRVKTVLK SYKQVLAEVK  660
ERLASDELGL IDVDALVKVE MDNLRKEIEI SKGRLLNIIF K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232255.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like isoform X1
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLW5DF350.0W5DF35_WHEAT; Uncharacterized protein
STRINGMLOC_5109.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.12e-10B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]